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<!– # <img src="../assets/logo.svg" width="30%" align="right" /> GeneFinder –>

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.

Stable

Build Status

MIT license

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Coverage

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<!– Aqua QA –>

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Overview

This is a species-agnostic, algorithm extensible, sequence-anonymous (genome, metagenomes) gene finder library for the Julia Language.

The main idea is to create versatile module that enables apply different implemented algorithm to DNA sequences. See the BioAlignment implementation of different sequence alignment algorithms (local, global, edit-distance).

Installation

You can install BioSequences from the julia REPL. Press ] to enter pkg mode, and enter the following:

add GeneFinder

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Algorithms

Compatibilities

Must interact with or extend:

  • GenomicAnnotations.jl
  • BioSequences.jl
  • SequenceVariation.jl
  • GenomicFeatures.jl
  • FASTX.jl
  • Kmers.jl

Contributing

Citing

See CITATION.bib for the relevant reference(s).